Hierarchy For All Packages

Package Hierarchies:

uk.ac.ebi.microarray.zooma, uk.ac.ebi.microarray.zooma.annotations, uk.ac.ebi.microarray.zooma.calc, uk.ac.ebi.microarray.zooma.context, uk.ac.ebi.microarray.zooma.eval, uk.ac.ebi.microarray.zooma.formulate, uk.ac.ebi.microarray.zooma.hypothesis, uk.ac.ebi.microarray.zooma.lang, uk.ac.ebi.microarray.zooma.mapping, uk.ac.ebi.microarray.zooma.reports, uk.ac.ebi.microarray.zooma.retrieval, uk.ac.ebi.microarray.zooma.service, uk.ac.ebi.microarray.zooma.service.impl, uk.ac.ebi.microarray.zooma.track, uk.ac.ebi.microarray.zooma.utils

Class Hierarchy

• java.lang.Object
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractSet<E> (implements java.util.Set<E>)
      • java.util.HashSet<E> (implements java.lang.Cloneable, java.io.Serializable, java.util.Set<E>)
        • uk.ac.ebi.microarray.zooma.track.HypothesisSet (implements uk.ac.ebi.microarray.zooma.track.Information)
  • uk.ac.ebi.microarray.zooma.formulate.AbstractFormulator
    • uk.ac.ebi.microarray.zooma.formulate.ContextSensitiveMappingFormulator (implements uk.ac.ebi.microarray.zooma.formulate.OntologyMappingFormulator)
  • javax.annotation.processing.AbstractProcessor (implements javax.annotation.processing.Processor)
    • uk.ac.ebi.microarray.zooma.annotations.ZoomaProcessor
  • uk.ac.ebi.microarray.zooma.hypothesis.AbstractTrackedHypothesis (implements uk.ac.ebi.microarray.zooma.track.Information, uk.ac.ebi.microarray.zooma.hypothesis.OntologyMappingHypothesis)
    • uk.ac.ebi.microarray.zooma.hypothesis.NoMappingPossibleHypothesis
    • uk.ac.ebi.microarray.zooma.hypothesis.PossibleDuplicateMappingsHypothesis
  • uk.ac.ebi.microarray.zooma.context.AggregatedContext (implements uk.ac.ebi.microarray.zooma.context.OntologyMappingContext)
  • uk.ac.ebi.microarray.zooma.service.impl.AjaxZoomaBean
  • uk.ac.ebi.microarray.zooma.eval.BasicZoomaOutcome (implements uk.ac.ebi.microarray.zooma.eval.OntologyMappingOutcome)
  • uk.ac.ebi.microarray.zooma.service.impl.BasicZoomaService (implements uk.ac.ebi.microarray.zooma.service.ZoomaService)
  • uk.ac.ebi.microarray.zooma.retrieval.CompositeOntologyTermRetriever (implements uk.ac.ebi.microarray.zooma.retrieval.OntologyTermRetriever)
  • uk.ac.ebi.microarray.zooma.utils.Configurator
  • uk.ac.ebi.microarray.zooma.utils.Constants
  • uk.ac.ebi.microarray.zooma.track.CurationTracker (implements uk.ac.ebi.microarray.zooma.track.InformationTracker)
  • uk.ac.ebi.microarray.zooma.context.DefaultMappingContext (implements uk.ac.ebi.microarray.zooma.context.OntologyMappingContext)
    • uk.ac.ebi.microarray.zooma.context.OWLContext
  • uk.ac.ebi.microarray.zooma.eval.DefaultMappingEvaluator (implements uk.ac.ebi.microarray.zooma.eval.OntologyMappingEvaluator)
  • uk.ac.ebi.microarray.zooma.retrieval.EFOOntocatRetriever (implements uk.ac.ebi.microarray.zooma.retrieval.OntologyTermRetriever)
  • uk.ac.ebi.microarray.zooma.track.HypothesisRanking (implements uk.ac.ebi.microarray.zooma.track.Information)
  • uk.ac.ebi.microarray.zooma.track.HypothesisRankingTracker (implements uk.ac.ebi.microarray.zooma.track.HypothesisTracker)
  • uk.ac.ebi.microarray.zooma.mapping.JSONOntologyMapper (implements uk.ac.ebi.microarray.zooma.mapping.OntologyMapper)
  • uk.ac.ebi.microarray.zooma.context.NewTermContext (implements uk.ac.ebi.microarray.zooma.context.OntologyMappingContext)
  • uk.ac.ebi.microarray.zooma.formulate.NoPossibleMappingFormulator (implements uk.ac.ebi.microarray.zooma.formulate.OntologyMappingFormulator)
  • uk.ac.ebi.microarray.zooma.context.OntocatContext (implements uk.ac.ebi.microarray.zooma.context.OntologyMappingContext)
  • uk.ac.ebi.microarray.zooma.retrieval.OntocatRetriever (implements uk.ac.ebi.microarray.zooma.retrieval.OntologyTermRetriever)
  • uk.ac.ebi.microarray.zooma.eval.OntologyMappingOutcomeDecorator (implements uk.ac.ebi.microarray.zooma.eval.OntologyMappingOutcome)
    • uk.ac.ebi.microarray.zooma.eval.CurationDecorator
    • uk.ac.ebi.microarray.zooma.eval.FailureReportWriterDecorator
    • uk.ac.ebi.microarray.zooma.eval.JSONProducerDecorator
    • uk.ac.ebi.microarray.zooma.eval.ReportWriterDecorator
  • uk.ac.ebi.microarray.zooma.calc.OntologyRanker
  • uk.ac.ebi.microarray.zooma.retrieval.OntologyRetriever (implements uk.ac.ebi.microarray.zooma.retrieval.OntologyTermRetriever)
  • uk.ac.ebi.microarray.zooma.utils.OntologyUtils
  • uk.ac.ebi.microarray.zooma.calc.RankingBasedCalculator (implements uk.ac.ebi.microarray.zooma.calc.OntologyMappingCalculator)
  • uk.ac.ebi.microarray.zooma.reports.ReportTimer
  • uk.ac.ebi.microarray.zooma.calc.SourceRanker
  • uk.ac.ebi.microarray.zooma.mapping.TextReportingMapper (implements uk.ac.ebi.microarray.zooma.mapping.OntologyMapper)
  • uk.ac.ebi.microarray.zooma.reports.TextReports
  • uk.ac.ebi.microarray.zooma.lang.TextValue (implements uk.ac.ebi.microarray.zooma.lang.Value)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • uk.ac.ebi.microarray.zooma.eval.BadOutcomeException
      • uk.ac.ebi.microarray.zooma.hypothesis.HypothesisFormulationException
      • java.lang.RuntimeException
        • uk.ac.ebi.microarray.zooma.reports.ReportGenerationException
        • uk.ac.ebi.microarray.zooma.lang.ZoomaInvocationException
      • uk.ac.ebi.microarray.zooma.lang.ZoomaException
  • uk.ac.ebi.microarray.zooma.hypothesis.TrackedHypothesisFactory (implements uk.ac.ebi.microarray.zooma.hypothesis.OntologyMappingHypothesisFactory)
  • java.io.Writer (implements java.lang.Appendable, java.io.Closeable, java.io.Flushable)
    • uk.ac.ebi.microarray.zooma.reports.ReportWriter
      • uk.ac.ebi.microarray.zooma.reports.TextReportWriter
  • uk.ac.ebi.microarray.zooma.ZoomaDriver
  • uk.ac.ebi.microarray.zooma.utils.ZoomaInspector

Interface Hierarchy

• uk.ac.ebi.microarray.zooma.track.Information
  • uk.ac.ebi.microarray.zooma.hypothesis.OntologyMappingHypothesis
• uk.ac.ebi.microarray.zooma.track.InformationTracker
  • uk.ac.ebi.microarray.zooma.track.HypothesisTracker
• uk.ac.ebi.microarray.zooma.mapping.OntologyMapper
• uk.ac.ebi.microarray.zooma.calc.OntologyMappingCalculator
• uk.ac.ebi.microarray.zooma.context.OntologyMappingContext
• uk.ac.ebi.microarray.zooma.eval.OntologyMappingEvaluator
• uk.ac.ebi.microarray.zooma.formulate.OntologyMappingFormulator
• uk.ac.ebi.microarray.zooma.hypothesis.OntologyMappingHypothesisFactory
• uk.ac.ebi.microarray.zooma.hypothesis.OntologyMappingHypothesisVisitor
• uk.ac.ebi.microarray.zooma.eval.OntologyMappingOutcome
• uk.ac.ebi.microarray.zooma.service.OntologyRankingService
• uk.ac.ebi.microarray.zooma.retrieval.OntologyTermRetriever
• uk.ac.ebi.microarray.zooma.service.SourceRankingService
• uk.ac.ebi.microarray.zooma.lang.Value
• uk.ac.ebi.microarray.zooma.utils.ZoomaMode
• uk.ac.ebi.microarray.zooma.utils.ZoomaMode.Argument
• uk.ac.ebi.microarray.zooma.utils.ZoomaMode.Operation
• uk.ac.ebi.microarray.zooma.service.ZoomaService

Annotation Type Hierarchy

• uk.ac.ebi.microarray.zooma.annotations.ZoomaMappingOperation (implements java.lang.annotation.Annotation)
• uk.ac.ebi.microarray.zooma.annotations.ZoomaMappingGenerator (implements java.lang.annotation.Annotation)
• uk.ac.ebi.microarray.zooma.annotations.ZoomaMappingArgument (implements java.lang.annotation.Annotation)

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • uk.ac.ebi.microarray.zooma.hypothesis.Source