uk.ac.ebi.microarray.zooma.service.impl
Class BasicZoomaService

java.lang.Object
  uk.ac.ebi.microarray.zooma.service.impl.BasicZoomaService

All Implemented Interfaces:

ZoomaService

@ZoomaMappingGenerator(mode="json")
public class BasicZoomaService
extends java.lang.Object
implements ZoomaService

A basic implementation of a zooma service. This class is a ZoomaMappingGenerator; this means it can legitimately be used on the command line to generate serialized JSON objects - the

Author:

Tony Burdett

Field Summary

protected org.slf4j.Logger

log

Constructor Summary

BasicZoomaService()

Method Summary

boolean	generateJSONMappingObject(java.lang.String reportDirectory, java.lang.String value)
net.sf.json.JSONObject	generateMappings(java.lang.String value) Generates a JSON object that encapsulates any mappings generated by ZOOMA for the value specified.
protected org.slf4j.Logger	getLog()
JSONOntologyMapper	getMapper()
void	setMapper(JSONOntologyMapper mapper)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

log

protected final org.slf4j.Logger log

Constructor Detail

BasicZoomaService

public BasicZoomaService()

Method Detail

getMapper

public JSONOntologyMapper getMapper()

setMapper

public void setMapper(JSONOntologyMapper mapper)

getLog

protected org.slf4j.Logger getLog()

generateMappings

public net.sf.json.JSONObject generateMappings(java.lang.String value)
                                        throws BadOutcomeException

Generates a JSON object that encapsulates any mappings generated by ZOOMA for the value specified.

Specified by:

generateMappings in interface ZoomaService

Parameters:

value - the text value to map

Returns:

a JSON object describing this mapping

Throws:

BadOutcomeException - if the outcome could not be generated

generateJSONMappingObject

@ZoomaMappingOperation(operation="generate",
                       shortName="g",
                       description="generates a JSON object describing the mappings from the supplied text value")
public boolean generateJSONMappingObject(@ZoomaMappingArgument(name="report-directory",shortName="d",description="The directory in which reports will be written",required=false)
                                                                                            java.lang.String reportDirectory,
                                                                                            @ZoomaMappingArgument(name="value",shortName="v",description="The value to map")
                                                                                            java.lang.String value)