uk.ac.ebi.microarray.zooma.reports
Class TextReportWriter

java.lang.Object
  java.io.Writer
      uk.ac.ebi.microarray.zooma.reports.ReportWriter
          uk.ac.ebi.microarray.zooma.reports.TextReportWriter

All Implemented Interfaces:

java.io.Closeable, java.io.Flushable, java.lang.Appendable

public class TextReportWriter
extends ReportWriter

A ReportWriter implementation that writes a simple tab delimited text report based around a simple format. TextReportingMappers use this writer to actually generate the report.

Author:

Tony Burdett

See Also:

TextReportingMapper

Field Summary

Fields inherited from class java.io.Writer

lock

Constructor Summary

TextReportWriter(java.io.File file)
Creates a ReportWriter that buffers written lines, sorting them alphabetically.

Method Summary

void	write(OntologyMappingOutcome outcome)
protected void	writeReportHeader(java.io.PrintWriter writer) Writes the header of the report into the supplied print writer.

Methods inherited from class uk.ac.ebi.microarray.zooma.reports.ReportWriter

close, endReport, extractOntologyTermFromURI, fetchOntologyName, flush, getLog, lookupVersionFromMavenProperties, startReport, write, writeReportFooter

Methods inherited from class java.io.Writer

append, append, append, write, write, write, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TextReportWriter

public TextReportWriter(java.io.File file)

Creates a ReportWriter that buffers written lines, sorting them alphabetically. The file is only created on completion, once this writer is closed.

Parameters:

file - the file to write the report to

Method Detail

writeReportHeader

protected void writeReportHeader(java.io.PrintWriter writer)

Description copied from class: ReportWriter

Writes the header of the report into the supplied print writer. If you require columns headers at the top of your report, you should extend this method, calling super.writeReportHeader() first followed by writer.println(<my line here>);

Overrides:

writeReportHeader in class ReportWriter

Parameters:

writer - the writer to write the header data to

write

public void write(OntologyMappingOutcome outcome)
           throws java.io.IOException

Throws:

java.io.IOException