Uses of Interface
uk.ac.ebi.microarray.zooma.eval.OntologyMappingOutcome

Packages that use OntologyMappingOutcome

uk.ac.ebi.microarray.zooma.eval
uk.ac.ebi.microarray.zooma.mapping
uk.ac.ebi.microarray.zooma.reports

Uses of OntologyMappingOutcome in uk.ac.ebi.microarray.zooma.eval

Classes in uk.ac.ebi.microarray.zooma.eval that implement OntologyMappingOutcome

class	BasicZoomaOutcome A default outcome implementation that simply records the set of valued hypotheses and does nothing when applied.
class	CurationDecorator An outcome of a mapping process that indicates some curation is required in order to know which of the several possible mapping hypotheses should be accepted.
class	FailureReportWriterDecorator Javadocs go here!
class	JSONProducerDecorator A decorator that has the ability to generate a JSON object from an outcome once applied.
class	OntologyMappingOutcomeDecorator An abstract class that implements OntologyMappingOutcome and follows the decorator pattern.
class	ReportWriterDecorator An outcome decorator that decorates an outcome with the ability to generate text reports whenever the outcome is applied.

Methods in uk.ac.ebi.microarray.zooma.eval that return OntologyMappingOutcome

OntologyMappingOutcome	CurationDecorator.curate()
OntologyMappingOutcome	OntologyMappingEvaluator.evaluateOutcome(Value value, java.util.Collection<OntologyMappingHypothesis> hypotheses) Evaluates the ontology mapping outcome for a collection of mapping hypotheses.
OntologyMappingOutcome	DefaultMappingEvaluator.evaluateOutcome(Value value, java.util.Collection<OntologyMappingHypothesis> hypotheses) Incrementally performs simple pairwise comparison.
static OntologyMappingOutcome	JSONProducerDecorator.generateJSONProducingOutcome(OntologyMappingOutcome outcome)
static OntologyMappingOutcome	FailureReportWriterDecorator.generateTextFailureReportOutcome(OntologyMappingOutcome outcome, TextReportWriter failureReportWriter)
static OntologyMappingOutcome	ReportWriterDecorator.generateTextReportOutcome(OntologyMappingOutcome outcome, TextReportWriter reportWriter)
protected OntologyMappingOutcome	OntologyMappingOutcomeDecorator.getOutcome()

Methods in uk.ac.ebi.microarray.zooma.eval with parameters of type OntologyMappingOutcome

static OntologyMappingOutcome	JSONProducerDecorator.generateJSONProducingOutcome(OntologyMappingOutcome outcome)
static OntologyMappingOutcome	FailureReportWriterDecorator.generateTextFailureReportOutcome(OntologyMappingOutcome outcome, TextReportWriter failureReportWriter)
static OntologyMappingOutcome	ReportWriterDecorator.generateTextReportOutcome(OntologyMappingOutcome outcome, TextReportWriter reportWriter)

Constructors in uk.ac.ebi.microarray.zooma.eval with parameters of type OntologyMappingOutcome

CurationDecorator(OntologyMappingOutcome outcome, CurationTracker tracker)

FailureReportWriterDecorator(OntologyMappingOutcome outcome)

JSONProducerDecorator(OntologyMappingOutcome outcome)

OntologyMappingOutcomeDecorator(OntologyMappingOutcome outcome)

ReportWriterDecorator(OntologyMappingOutcome outcome)

Uses of OntologyMappingOutcome in uk.ac.ebi.microarray.zooma.mapping

Methods in uk.ac.ebi.microarray.zooma.mapping that return OntologyMappingOutcome

OntologyMappingOutcome	TextReportingMapper.generateOutcome(Value value)
OntologyMappingOutcome	JSONOntologyMapper.generateOutcome(Value value)
OntologyMappingOutcome	OntologyMapper.generateOutcome(Value value) Generates an OntologyMappingOutcome given a description and a mapping context.

Methods in uk.ac.ebi.microarray.zooma.mapping with parameters of type OntologyMappingOutcome

void	TextReportingMapper.applyOutcome(OntologyMappingOutcome outcome)
void	JSONOntologyMapper.applyOutcome(OntologyMappingOutcome outcome)
void	OntologyMapper.applyOutcome(OntologyMappingOutcome outcome) Assesses and applies, the given outcome.

Uses of OntologyMappingOutcome in uk.ac.ebi.microarray.zooma.reports

Methods in uk.ac.ebi.microarray.zooma.reports with parameters of type OntologyMappingOutcome

void	TextReportWriter.write(OntologyMappingOutcome outcome)