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setUp() - Method in class uk.ac.ebi.microarray.zooma.calc.TestRankingBasedCalculator

setUp() - Method in class uk.ac.ebi.microarray.zooma.eval.TestDefaultMappingEvaluator

setUp() - Method in class uk.ac.ebi.microarray.zooma.formulate.TestContextSensitiveMappingFormulator

setUp() - Method in class uk.ac.ebi.microarray.zooma.formulate.TestNoPossibleMappingFormulator

setUp() - Method in class uk.ac.ebi.microarray.zooma.mapping.TestMappingGeneration

setUp() - Method in class uk.ac.ebi.microarray.zooma.misc.TestOntocat

setUp() - Method in class uk.ac.ebi.microarray.zooma.retrieval.TestCompositeRetriever

setUp() - Method in class uk.ac.ebi.microarray.zooma.retrieval.TestOntocatRetriever

setUp() - Method in class uk.ac.ebi.microarray.zooma.retrieval.TestOntologyFileRetriever

setUp() - Method in class uk.ac.ebi.microarray.zooma.retrieval.TestOntologyRetriever

setUp() - Method in class uk.ac.ebi.microarray.zooma.track.TestHypothesisRankingTracker

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tearDown() - Method in class uk.ac.ebi.microarray.zooma.calc.TestRankingBasedCalculator

tearDown() - Method in class uk.ac.ebi.microarray.zooma.eval.TestDefaultMappingEvaluator

tearDown() - Method in class uk.ac.ebi.microarray.zooma.formulate.TestContextSensitiveMappingFormulator

tearDown() - Method in class uk.ac.ebi.microarray.zooma.formulate.TestNoPossibleMappingFormulator

tearDown() - Method in class uk.ac.ebi.microarray.zooma.mapping.TestMappingGeneration

tearDown() - Method in class uk.ac.ebi.microarray.zooma.misc.TestOntocat

tearDown() - Method in class uk.ac.ebi.microarray.zooma.retrieval.TestCompositeRetriever

tearDown() - Method in class uk.ac.ebi.microarray.zooma.retrieval.TestOntocatRetriever

tearDown() - Method in class uk.ac.ebi.microarray.zooma.retrieval.TestOntologyFileRetriever

tearDown() - Method in class uk.ac.ebi.microarray.zooma.retrieval.TestOntologyRetriever

tearDown() - Method in class uk.ac.ebi.microarray.zooma.track.TestHypothesisRankingTracker

testAcceptReplacesNull() - Method in class uk.ac.ebi.microarray.zooma.track.TestHypothesisRankingTracker

testAssessAllHypothesis() - Method in class uk.ac.ebi.microarray.zooma.calc.TestRankingBasedCalculator

TestCompositeRetriever - Class in uk.ac.ebi.microarray.zooma.retrieval

Tests retrieval of ontology terms using a composite service configured with atlas and ontocat retrievers

TestCompositeRetriever() - Constructor for class uk.ac.ebi.microarray.zooma.retrieval.TestCompositeRetriever

TestContextSensitiveMappingFormulator - Class in uk.ac.ebi.microarray.zooma.formulate

Javadocs go here!

TestContextSensitiveMappingFormulator() - Constructor for class uk.ac.ebi.microarray.zooma.formulate.TestContextSensitiveMappingFormulator

testCurrentAlternatives() - Method in class uk.ac.ebi.microarray.zooma.track.TestHypothesisRankingTracker

testCurrentAlternativesAfterReject() - Method in class uk.ac.ebi.microarray.zooma.track.TestHypothesisRankingTracker

testCurrentNull() - Method in class uk.ac.ebi.microarray.zooma.track.TestHypothesisRankingTracker

TestDefaultMappingEvaluator - Class in uk.ac.ebi.microarray.zooma.eval

Javadocs go here!

TestDefaultMappingEvaluator() - Constructor for class uk.ac.ebi.microarray.zooma.eval.TestDefaultMappingEvaluator

testEvaluate() - Method in class uk.ac.ebi.microarray.zooma.eval.TestDefaultMappingEvaluator

testFetchContext() - Method in class uk.ac.ebi.microarray.zooma.retrieval.TestCompositeRetriever

testFetchContext() - Method in class uk.ac.ebi.microarray.zooma.retrieval.TestOntocatRetriever

testFetchExistsTerms() - Method in class uk.ac.ebi.microarray.zooma.misc.TestOntocat

testFetchExistsTermsFromBioportal() - Method in class uk.ac.ebi.microarray.zooma.misc.TestOntocat

testFetchExistsTermsFromFile() - Method in class uk.ac.ebi.microarray.zooma.misc.TestOntocat

testFetchExistsTermsFromOLS() - Method in class uk.ac.ebi.microarray.zooma.misc.TestOntocat

testFetchForTerm() - Method in class uk.ac.ebi.microarray.zooma.misc.TestOntocat

testFetchInParallel() - Method in class uk.ac.ebi.microarray.zooma.misc.TestOntocat

testFetchNotExistsTerms() - Method in class uk.ac.ebi.microarray.zooma.misc.TestOntocat

testFetchNotExistsTermsFromBioportal() - Method in class uk.ac.ebi.microarray.zooma.misc.TestOntocat

testFetchNotExistsTermsFromFile() - Method in class uk.ac.ebi.microarray.zooma.misc.TestOntocat

testFetchNotExistsTermsFromOLS() - Method in class uk.ac.ebi.microarray.zooma.misc.TestOntocat

testFetchOntology() - Method in class uk.ac.ebi.microarray.zooma.misc.TestOntocat

testFetchTerms() - Method in class uk.ac.ebi.microarray.zooma.retrieval.TestCompositeRetriever

testFetchTerms() - Method in class uk.ac.ebi.microarray.zooma.retrieval.TestOntocatRetriever

testFetchTerms() - Method in class uk.ac.ebi.microarray.zooma.retrieval.TestOntologyFileRetriever

testFormulateHypotheses() - Method in class uk.ac.ebi.microarray.zooma.formulate.TestContextSensitiveMappingFormulator

testFormulateHypotheses() - Method in class uk.ac.ebi.microarray.zooma.formulate.TestNoPossibleMappingFormulator

testGenerate() - Method in class uk.ac.ebi.microarray.zooma.mapping.TestMappingGeneration

testGetOntology() - Method in class uk.ac.ebi.microarray.zooma.misc.TestOntocat

TestHypothesisRankingTracker - Class in uk.ac.ebi.microarray.zooma.track

Javadocs go here!

TestHypothesisRankingTracker() - Constructor for class uk.ac.ebi.microarray.zooma.track.TestHypothesisRankingTracker

testIsObsoleted() - Method in class uk.ac.ebi.microarray.zooma.retrieval.TestOntologyRetriever

TestMappingGeneration - Class in uk.ac.ebi.microarray.zooma.mapping

Javadocs go here!

TestMappingGeneration() - Constructor for class uk.ac.ebi.microarray.zooma.mapping.TestMappingGeneration

TestNoPossibleMappingFormulator - Class in uk.ac.ebi.microarray.zooma.formulate

Javadocs go here!

TestNoPossibleMappingFormulator() - Constructor for class uk.ac.ebi.microarray.zooma.formulate.TestNoPossibleMappingFormulator

TestOntocat - Class in uk.ac.ebi.microarray.zooma.misc

Tests retrieval of ontology terms using ontocat

TestOntocat() - Constructor for class uk.ac.ebi.microarray.zooma.misc.TestOntocat

TestOntocatRetriever - Class in uk.ac.ebi.microarray.zooma.retrieval

Tests retrieval of ontology terms using ontocat

TestOntocatRetriever() - Constructor for class uk.ac.ebi.microarray.zooma.retrieval.TestOntocatRetriever

TestOntologyFileRetriever - Class in uk.ac.ebi.microarray.zooma.retrieval

Javadocs go here!

TestOntologyFileRetriever() - Constructor for class uk.ac.ebi.microarray.zooma.retrieval.TestOntologyFileRetriever

TestOntologyRetriever - Class in uk.ac.ebi.microarray.zooma.retrieval

Javadocs go here!

TestOntologyRetriever() - Constructor for class uk.ac.ebi.microarray.zooma.retrieval.TestOntologyRetriever

testOntologyVsBoth() - Method in class uk.ac.ebi.microarray.zooma.calc.TestRankingBasedCalculator

testOntologyVsSource() - Method in class uk.ac.ebi.microarray.zooma.calc.TestRankingBasedCalculator

TestRankingBasedCalculator - Class in uk.ac.ebi.microarray.zooma.calc

A test case that test a RankingBasedCalculator using only hypotheses from Atlas, EFO

TestRankingBasedCalculator() - Constructor for class uk.ac.ebi.microarray.zooma.calc.TestRankingBasedCalculator

testSourceVsBoth() - Method in class uk.ac.ebi.microarray.zooma.calc.TestRankingBasedCalculator

testSourceVsOntology() - Method in class uk.ac.ebi.microarray.zooma.calc.TestRankingBasedCalculator

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uk.ac.ebi.microarray.zooma.calc - package uk.ac.ebi.microarray.zooma.calc

uk.ac.ebi.microarray.zooma.eval - package uk.ac.ebi.microarray.zooma.eval

uk.ac.ebi.microarray.zooma.formulate - package uk.ac.ebi.microarray.zooma.formulate

uk.ac.ebi.microarray.zooma.mapping - package uk.ac.ebi.microarray.zooma.mapping

uk.ac.ebi.microarray.zooma.misc - package uk.ac.ebi.microarray.zooma.misc

uk.ac.ebi.microarray.zooma.retrieval - package uk.ac.ebi.microarray.zooma.retrieval

uk.ac.ebi.microarray.zooma.track - package uk.ac.ebi.microarray.zooma.track

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