Uses of Interface
uk.ac.ebi.microarray.zooma.lang.Value

Packages that use Value

uk.ac.ebi.microarray.zooma.eval
uk.ac.ebi.microarray.zooma.formulate
uk.ac.ebi.microarray.zooma.hypothesis
uk.ac.ebi.microarray.zooma.lang
uk.ac.ebi.microarray.zooma.mapping
uk.ac.ebi.microarray.zooma.retrieval

Uses of Value in uk.ac.ebi.microarray.zooma.eval

Methods in uk.ac.ebi.microarray.zooma.eval that return Value

Value	OntologyMappingOutcomeDecorator.getUnmappedValue()
Value	BasicZoomaOutcome.getUnmappedValue()
Value	OntologyMappingOutcome.getUnmappedValue() Returns that value that has been used to produce this outcome.

Methods in uk.ac.ebi.microarray.zooma.eval with parameters of type Value

OntologyMappingOutcome	OntologyMappingEvaluator.evaluateOutcome(Value value, java.util.Collection<OntologyMappingHypothesis> hypotheses) Evaluates the ontology mapping outcome for a collection of mapping hypotheses.
OntologyMappingOutcome	DefaultMappingEvaluator.evaluateOutcome(Value value, java.util.Collection<OntologyMappingHypothesis> hypotheses) Incrementally performs simple pairwise comparison.

Constructors in uk.ac.ebi.microarray.zooma.eval with parameters of type Value

BasicZoomaOutcome(Value value, java.util.Collection<OntologyMappingHypothesis> bestHypotheses)

Uses of Value in uk.ac.ebi.microarray.zooma.formulate

Methods in uk.ac.ebi.microarray.zooma.formulate with parameters of type Value

java.util.Collection<OntologyMappingHypothesis>	NoPossibleMappingFormulator.formulateHypotheses(Value value)
java.util.Collection<OntologyMappingHypothesis>	ContextSensitiveMappingFormulator.formulateHypotheses(Value value)
java.util.Collection<OntologyMappingHypothesis>	OntologyMappingFormulator.formulateHypotheses(Value value) Formulate a set of hypotheses that describe the possible mappings that might be made about the given value.

Uses of Value in uk.ac.ebi.microarray.zooma.hypothesis

Fields in uk.ac.ebi.microarray.zooma.hypothesis declared as Value

protected Value

AbstractTrackedHypothesis.value

Methods in uk.ac.ebi.microarray.zooma.hypothesis that return Value

Value	AbstractTrackedHypothesis.getValue()
Value	OntologyMappingHypothesis.getValue() Gets the description that is attempted to be mapped in this hypothesis.

Methods in uk.ac.ebi.microarray.zooma.hypothesis with parameters of type Value

OntologyMappingHypothesis	TrackedHypothesisFactory.generateHypothesis(Value value, OntologyMappingContext context, uk.ac.ebi.ontocat.OntologyTerm... ontologyTerms)
OntologyMappingHypothesis	OntologyMappingHypothesisFactory.generateHypothesis(Value value, OntologyMappingContext context, uk.ac.ebi.ontocat.OntologyTerm... ontologyTerms) Generates an ontology mapping hypothesis given a description, the term it may map to, and a context

Constructors in uk.ac.ebi.microarray.zooma.hypothesis with parameters of type Value

NoMappingPossibleHypothesis(Value value, OntologyMappingContext context)

PossibleDuplicateMappingsHypothesis(Value value, OntologyMappingContext context, uk.ac.ebi.ontocat.OntologyTerm... terms)

Uses of Value in uk.ac.ebi.microarray.zooma.lang

Classes in uk.ac.ebi.microarray.zooma.lang that implement Value

class

TextValue A very basic Value implementation that simply wraps a plain text string.

Uses of Value in uk.ac.ebi.microarray.zooma.mapping

Methods in uk.ac.ebi.microarray.zooma.mapping with parameters of type Value

OntologyMappingOutcome	TextReportingMapper.generateOutcome(Value value)
OntologyMappingOutcome	JSONOntologyMapper.generateOutcome(Value value)
OntologyMappingOutcome	OntologyMapper.generateOutcome(Value value) Generates an OntologyMappingOutcome given a description and a mapping context.

Uses of Value in uk.ac.ebi.microarray.zooma.retrieval

Methods in uk.ac.ebi.microarray.zooma.retrieval with parameters of type Value

java.util.Collection<OntologyMappingContext>	EFOOntocatRetriever.fetchMappingContexts(Value value, uk.ac.ebi.ontocat.OntologyTerm term)
java.util.Collection<OntologyMappingContext>	CompositeOntologyTermRetriever.fetchMappingContexts(Value value, uk.ac.ebi.ontocat.OntologyTerm term) Returns the set of unique contexts retrieved from each retriever encapsulated by this composite retriever.
java.util.Collection<OntologyMappingContext>	OntologyTermRetriever.fetchMappingContexts(Value value, uk.ac.ebi.ontocat.OntologyTerm term) Fetch the contexts in which the given description is mapped to the given term, if any.
java.util.Collection<OntologyMappingContext>	OntologyRetriever.fetchMappingContexts(Value value, uk.ac.ebi.ontocat.OntologyTerm term)
java.util.Collection<OntologyMappingContext>	OntocatRetriever.fetchMappingContexts(Value value, uk.ac.ebi.ontocat.OntologyTerm term)
java.util.Collection<uk.ac.ebi.ontocat.OntologyTerm>	EFOOntocatRetriever.fetchTerms(Value value)
java.util.Collection<uk.ac.ebi.ontocat.OntologyTerm>	CompositeOntologyTermRetriever.fetchTerms(Value value) Returns a set of unique terms retrieved from each retriever encapsulated by this composite retriever.
java.util.Collection<uk.ac.ebi.ontocat.OntologyTerm>	OntologyTermRetriever.fetchTerms(Value value) Fetch a collection of terms using the given description as a search parameter.
java.util.Collection<uk.ac.ebi.ontocat.OntologyTerm>	OntologyRetriever.fetchTerms(Value value) Fetches terms that can be matched against EFO.
java.util.Collection<uk.ac.ebi.ontocat.OntologyTerm>	OntocatRetriever.fetchTerms(Value value)