Uses of Interface
uk.ac.ebi.microarray.zooma.retrieval.OntologyTermRetriever

Packages that use OntologyTermRetriever

uk.ac.ebi.microarray.zooma.formulate
uk.ac.ebi.microarray.zooma.mapping
uk.ac.ebi.microarray.zooma.retrieval

Uses of OntologyTermRetriever in uk.ac.ebi.microarray.zooma.formulate

Methods in uk.ac.ebi.microarray.zooma.formulate that return OntologyTermRetriever

OntologyTermRetriever	ContextSensitiveMappingFormulator.getOntologyTermRetriever()
protected OntologyTermRetriever	AbstractFormulator.getRetriever()

Methods in uk.ac.ebi.microarray.zooma.formulate with parameters of type OntologyTermRetriever

void	AbstractFormulator.addRetriever(OntologyTermRetriever retrieverToAdd)
void	AbstractFormulator.removeRetriever(OntologyTermRetriever retriever)
void	ContextSensitiveMappingFormulator.setOntologyTermRetriever(OntologyTermRetriever retriever)
protected void	AbstractFormulator.setRetriever(OntologyTermRetriever retriever)

Uses of OntologyTermRetriever in uk.ac.ebi.microarray.zooma.mapping

Methods in uk.ac.ebi.microarray.zooma.mapping with parameters of type OntologyTermRetriever

void	TextReportingMapper.addRetriever(OntologyTermRetriever retriever) Add an ontology term retriever to use to generate mapping outcomes.

Uses of OntologyTermRetriever in uk.ac.ebi.microarray.zooma.retrieval

Classes in uk.ac.ebi.microarray.zooma.retrieval that implement OntologyTermRetriever

class	CompositeOntologyTermRetriever An ontology term retriever that is a composite of a list of ontology term retrievers.
class	EFOOntocatRetriever An ontology term retriever that utilises the ontocat API to retrieve terms from EFO.
class	OntocatRetriever An ontology term retriever that utilises ontocat to dispatch queries to OLS, Bioportal and EFO (using a dedicated URL).
class	OntologyRetriever Retrieves OntologyTerms from an ontology file in OWL or OBO formats.

Methods in uk.ac.ebi.microarray.zooma.retrieval that return types with arguments of type OntologyTermRetriever

java.util.List<OntologyTermRetriever>

CompositeOntologyTermRetriever.getOntologyTermRetrievers()

Method parameters in uk.ac.ebi.microarray.zooma.retrieval with type arguments of type OntologyTermRetriever

void	CompositeOntologyTermRetriever.setOntologyTermRetrievers(java.util.List<OntologyTermRetriever> retrievers)

Constructors in uk.ac.ebi.microarray.zooma.retrieval with parameters of type OntologyTermRetriever

CompositeOntologyTermRetriever(OntologyTermRetriever... retrievers)

Constructor parameters in uk.ac.ebi.microarray.zooma.retrieval with type arguments of type OntologyTermRetriever

CompositeOntologyTermRetriever(java.util.List<OntologyTermRetriever> retrievers)