Uses of Interface
uk.ac.ebi.microarray.zooma.context.OntologyMappingContext

Packages that use OntologyMappingContext

uk.ac.ebi.microarray.zooma.context
uk.ac.ebi.microarray.zooma.hypothesis
uk.ac.ebi.microarray.zooma.retrieval

Uses of OntologyMappingContext in uk.ac.ebi.microarray.zooma.context

Classes in uk.ac.ebi.microarray.zooma.context that implement OntologyMappingContext

class	AggregatedContext An ontology mapping context that is the aggregation of several contexts, normally asserting an identical mapping.
class	DefaultMappingContext A basic implementation of a mapping context that contains only core information.
class	NewTermContext A context representing newly submitted, text based values.
class	OntocatContext An ontology mapping context acquired from ontocat.
class	OWLContext A mapping context acquired from EFO.

Methods in uk.ac.ebi.microarray.zooma.context that return types with arguments of type OntologyMappingContext

java.util.Set<OntologyMappingContext>

AggregatedContext.getOriginalContexts()

Constructors in uk.ac.ebi.microarray.zooma.context with parameters of type OntologyMappingContext

AggregatedContext(OntologyMappingContext... contexts)

Uses of OntologyMappingContext in uk.ac.ebi.microarray.zooma.hypothesis

Fields in uk.ac.ebi.microarray.zooma.hypothesis declared as OntologyMappingContext

protected OntologyMappingContext

AbstractTrackedHypothesis.context

Methods in uk.ac.ebi.microarray.zooma.hypothesis that return OntologyMappingContext

OntologyMappingContext	AbstractTrackedHypothesis.getContext()
OntologyMappingContext	OntologyMappingHypothesis.getContext() The context in which this mapping hypothesis should be attempted

Methods in uk.ac.ebi.microarray.zooma.hypothesis with parameters of type OntologyMappingContext

void	AbstractTrackedHypothesis.aggregateContextFromEquivalentHypothesis(OntologyMappingContext equivalentContext)
OntologyMappingHypothesis	TrackedHypothesisFactory.generateHypothesis(Value value, OntologyMappingContext context, uk.ac.ebi.ontocat.OntologyTerm... ontologyTerms)
OntologyMappingHypothesis	OntologyMappingHypothesisFactory.generateHypothesis(Value value, OntologyMappingContext context, uk.ac.ebi.ontocat.OntologyTerm... ontologyTerms) Generates an ontology mapping hypothesis given a description, the term it may map to, and a context

Constructors in uk.ac.ebi.microarray.zooma.hypothesis with parameters of type OntologyMappingContext

NoMappingPossibleHypothesis(Value value, OntologyMappingContext context)

PossibleDuplicateMappingsHypothesis(Value value, OntologyMappingContext context, uk.ac.ebi.ontocat.OntologyTerm... terms)

Uses of OntologyMappingContext in uk.ac.ebi.microarray.zooma.retrieval

Methods in uk.ac.ebi.microarray.zooma.retrieval that return types with arguments of type OntologyMappingContext

java.util.Collection<OntologyMappingContext>	EFOOntocatRetriever.fetchMappingContexts(Value value, uk.ac.ebi.ontocat.OntologyTerm term)
java.util.Collection<OntologyMappingContext>	CompositeOntologyTermRetriever.fetchMappingContexts(Value value, uk.ac.ebi.ontocat.OntologyTerm term) Returns the set of unique contexts retrieved from each retriever encapsulated by this composite retriever.
java.util.Collection<OntologyMappingContext>	OntologyTermRetriever.fetchMappingContexts(Value value, uk.ac.ebi.ontocat.OntologyTerm term) Fetch the contexts in which the given description is mapped to the given term, if any.
java.util.Collection<OntologyMappingContext>	OntologyRetriever.fetchMappingContexts(Value value, uk.ac.ebi.ontocat.OntologyTerm term)
java.util.Collection<OntologyMappingContext>	OntocatRetriever.fetchMappingContexts(Value value, uk.ac.ebi.ontocat.OntologyTerm term)